Flags and Lollipops

Tuesday, November 15, 2005

Open Regulatory Annotation Database

I recently came across the Open Regulatory Annotation Database (ORegAnno, at not too much of a stretch). Anyway, I haven't delved very deeply into it, but it looks promising. It's a database of regulatory regions obtained from the literature.

Anybody can add new records or fix old ones (there's a validation process in place), it has a SOAP interface and the data and the software that serves up the data are all available under the LGPL. This is what a database should be...

Unfortunately it doesn't seem all that big. I guess it's a new project and time will tell if it develops into a valuable resource or gets forgotten like the hundreds of other all-conquering new databases that spring up every year (usually just before the deadline for NAR's database issue).

Good luck to them, anyway.

Comments and trackbacks Feel free to post your comments Anonymous Neil Blogger maximilian . This post has trackbacks.

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2 Comments:

At November 17, 2005 2:46 AM, Anonymous Neil said...

I wish them success - that's a really, really nicely designed database.

And how can TRANSFAC still be proprietary in this day and age? It was probably one of the first motif databases that I ever used and I suppose was launched in the day when bioinformatics was all about biotech stocks and everyone thought they could make a buck from the web - ah, naive times! There's no excuse for it now though.

 
At December 20, 2005 7:01 PM, Blogger maximilian said...

oreggano is not that bad! there's only 2500 human (!) regulatory elements in transfac at the moment, whereas in oreggano the figure is around 1000. Not too bad for such a young database.

 

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