Flags and Lollipops

Wednesday, September 14, 2005

Schemaball

Am feeling a bit guilty after being so negative towards the poor symbiowhatsit consortium. To make up for it here's something positive: a link to Martin Krzywinski's homepage at the BC Cancer Agency's Genome Sciences Centre.

Martin is responsible for Schemaball (found via Information Aesthetics) which is an open source Perl script that visualises SQL table schemas.
Schemaball produces images called schema balls. Schema balls are schema visualizations in which tables are ordered along a circle with table relationships drawn as curves or straight lines.
That's cool in itself, but his homepage also links to other goodies like Circos, which creates very pretty circular visualisations of sequence alignments, conservation and other such sequence features. Some of the screenshots are awesome (well, I thought that they were. I like genome visualisations, the mileage of your awe may vary).

Obviously there's also a lot of non circular diagram related material - a regular expression cooker and this interesting page on language fingerprints, for example.

Comments and trackbacks Feel free to post your comments Anonymous Neil . This post has trackbacks.

Trackbacks:

1 Comments:

At September 16, 2005 12:52 AM, Anonymous Neil said...

I'm a sucker for genome visualisation too. It's often less about being informative and more about looking pretty but hey, what's wrong with that once in a while.

Having worked on draft genomes for years, I dream of the day when we close one and I can feed it through a piece of circular diagram software. I've tried the Sangers psu_diagram (perl) and GenomeViz (python), but Circos looks great.

 

Post a Comment

<< Home


See all posts from: July 2005 August 2005 September 2005 October 2005 November 2005 December 2005 January 2006 February 2006 March 2006 April 2006 May 2006 June 2006 July 2006 September 2006 October 2006 November 2006 December 2006 January 2007 February 2007 March 2007 April 2007 May 2007 June 2007 July 2007 August 2007 October 2007 November 2007 December 2007 January 2008 February 2008 March 2008 April 2008 May 2008